3D structure

PDB id
8Y0U (explore in PDB, NAKB, or RNA 3D Hub)
Description
dormant ribosome with STM1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.59 Å

Loop

Sequence
CUUAAUUU*GGGGAAACUCAC*GGCCG
Length
25 nucleotides
Bulged bases
8Y0U|1|C2|G|1199, 8Y0U|1|C2|G|1201, 8Y0U|1|C2|A|1203
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8Y0U_017 not in the Motif Atlas
Homologous match to J3_8C3A_040
Geometric discrepancy: 0.1404
The information below is about J3_8C3A_040
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.3
Basepair signature
cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
Number of instances in this motif group
4

Unit IDs

8Y0U|1|C2|C|1180
8Y0U|1|C2|U|1181
8Y0U|1|C2|U|1182
8Y0U|1|C2|A|1183
8Y0U|1|C2|A|1184
8Y0U|1|C2|U|1185
8Y0U|1|C2|U|1186
8Y0U|1|C2|U|1187
*
8Y0U|1|C2|G|1198
8Y0U|1|C2|G|1199
8Y0U|1|C2|G|1200
8Y0U|1|C2|G|1201
8Y0U|1|C2|A|1202
8Y0U|1|C2|A|1203
8Y0U|1|C2|A|1204
8Y0U|1|C2|C|1205
8Y0U|1|C2|U|1206
8Y0U|1|C2|C|1207
8Y0U|1|C2|A|1208
8Y0U|1|C2|C|1209
*
8Y0U|1|C2|G|1454
8Y0U|1|C2|G|1455
8Y0U|1|C2|C|1456
8Y0U|1|C2|C|1457
8Y0U|1|C2|G|1458

Current chains

Chain C2
18S rRNA

Nearby chains

Chain SP
Small ribosomal subunit protein uS19
Chain SU
Small ribosomal subunit protein uS10
Chain SZ
Small ribosomal subunit protein eS25A
Chain Sd
Small ribosomal subunit protein uS14A
Chain Sf
Ubiquitin-ribosomal protein eS31 fusion protein

Coloring options:


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