J3_8Y0U_021

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

CACUG*CGUGCUGG*CGAG

Length

17 nucleotides

Bulged bases

8Y0U|1|C2|U|1473

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Y0U_021 not in the Motif Atlas

Homologous match to J3_9H3G_043

Geometric discrepancy: 0.2152

The information below is about J3_9H3G_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.4

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

7

Unit IDs

8Y0U|1|C2|C|1470
8Y0U|1|C2|A|1471
8Y0U|1|C2|C|1472
8Y0U|1|C2|U|1473
8Y0U|1|C2|G|1474
*
8Y0U|1|C2|C|1533
8Y0U|1|C2|G|1534
8Y0U|1|C2|U|1535
8Y0U|1|C2|G|1536
8Y0U|1|C2|C|1537
8Y0U|1|C2|U|1538
8Y0U|1|C2|G|1539
8Y0U|1|C2|G|1540
*
8Y0U|1|C2|C|1571
8Y0U|1|C2|G|1572
8Y0U|1|C2|A|1573
8Y0U|1|C2|G|1574

Current chains

Chain C2

18S rRNA

Nearby chains

Chain ST

Small ribosomal subunit protein eS19A

Chain SZ

Small ribosomal subunit protein eS25A