3D structure

PDB id
8Y0U (explore in PDB, NAKB, or RNA 3D Hub)
Description
dormant ribosome with STM1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.59 Å

Loop

Sequence
AUGAAAAG*CG*CU
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8Y0U_024 not in the Motif Atlas
Homologous match to J3_8P9A_046
Geometric discrepancy: 0.1017
The information below is about J3_8P9A_046
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_60031.2
Basepair signature
cWW-cWW-cWW-tWH-tSH-F-F
Number of instances in this motif group
7

Unit IDs

8Y0U|1|C1|A|369
8Y0U|1|C1|U|370
8Y0U|1|C1|G|371
8Y0U|1|C1|A|372
8Y0U|1|C1|A|373
8Y0U|1|C1|A|374
8Y0U|1|C1|A|375
8Y0U|1|C1|G|376
*
8Y0U|1|C1|C|403
8Y0U|1|C1|G|404
*
8Y0U|1|C3|C|19
8Y0U|1|C3|U|20

Current chains

Chain C1
25S rRNA
Chain C3
5.8S rRNA

Nearby chains

Chain LC
Large ribosomal subunit protein uL4A
Chain LY
Large ribosomal subunit protein uL24A
Chain Ll
Large ribosomal subunit protein eL39

Coloring options:


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