3D structure

PDB id
8Y0U (explore in PDB, NAKB, or RNA 3D Hub)
Description
dormant ribosome with STM1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.59 Å

Loop

Sequence
CCAUAU*AG*UG
Length
10 nucleotides
Bulged bases
8Y0U|1|C4|U|12
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8Y0U_042 not in the Motif Atlas
Homologous match to J3_8C3A_059
Geometric discrepancy: 0.1225
The information below is about J3_8C3A_059
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_12003.1
Basepair signature
cWW-F-cWW-tSS-F-cWW
Number of instances in this motif group
4

Unit IDs

8Y0U|1|C4|C|9
8Y0U|1|C4|C|10
8Y0U|1|C4|A|11
8Y0U|1|C4|U|12
8Y0U|1|C4|A|13
8Y0U|1|C4|U|14
*
8Y0U|1|C4|A|66
8Y0U|1|C4|G|67
*
8Y0U|1|C4|U|111
8Y0U|1|C4|G|112

Current chains

Chain C4
5S rRNA

Nearby chains

Chain C1
Large subunit ribosomal RNA; LSU rRNA
Chain LD
Large ribosomal subunit protein uL18
Chain LI
Large ribosomal subunit protein uL16
Chain LT
Large ribosomal subunit protein eL21A

Coloring options:


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