J3_8Y0W_014

3D structure

PDB id

8Y0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with eIF5A, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCG*UUCCG*CAAAG

Length

13 nucleotides

Bulged bases

8Y0W|1|S2|C|1138, 8Y0W|1|S2|A|1150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y0W|1|S2|C|1094
8Y0W|1|S2|C|1095
8Y0W|1|S2|G|1096
*
8Y0W|1|S2|U|1136
8Y0W|1|S2|U|1137
8Y0W|1|S2|C|1138
8Y0W|1|S2|C|1139
8Y0W|1|S2|G|1140
*
8Y0W|1|S2|C|1147
8Y0W|1|S2|A|1148
8Y0W|1|S2|A|1149
8Y0W|1|S2|A|1150
8Y0W|1|S2|G|1151

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SA

40S ribosomal protein SA

Chain SV

40S ribosomal protein S21

Chain SW

40S ribosomal protein S15a

Chain Sa

40S ribosomal protein S26

Chain Sb

40S ribosomal protein S27