J3_8Y0W_027

3D structure

PDB id

8Y0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with eIF5A, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

8Y0W|1|L5|G|959, 8Y0W|1|L5|C|962, 8Y0W|1|L5|G|965, 8Y0W|1|L5|C|967, 8Y0W|1|L5|C|968, 8Y0W|1|L5|C|969, 8Y0W|1|L5|U|971, 8Y0W|1|L5|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y0W|1|L5|C|712
8Y0W|1|L5|C|713
*
8Y0W|1|L5|G|955
8Y0W|1|L5|A|956
8Y0W|1|L5|G|957
8Y0W|1|L5|G|958
8Y0W|1|L5|G|959
8Y0W|1|L5|A|960
8Y0W|1|L5|G|961
8Y0W|1|L5|C|962
8Y0W|1|L5|G|963
8Y0W|1|L5|A|964
8Y0W|1|L5|G|965
8Y0W|1|L5|A|966
8Y0W|1|L5|C|967
8Y0W|1|L5|C|968
8Y0W|1|L5|C|969
8Y0W|1|L5|G|970
8Y0W|1|L5|U|971
8Y0W|1|L5|C|972
8Y0W|1|L5|G|973
8Y0W|1|L5|C|974
8Y0W|1|L5|C|975
8Y0W|1|L5|G|976
*
8Y0W|1|L5|C|1278
8Y0W|1|L5|A|1279
8Y0W|1|L5|C|1280
8Y0W|1|L5|G|1281
8Y0W|1|L5|G|1282
8Y0W|1|L5|G|1283
8Y0W|1|L5|G|1284

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

60S ribosomal protein L6

Chain LF

60S ribosomal protein L7

Chain Le

60S ribosomal protein L32