J3_8Y0X_021

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

8Y0X|1|L5|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y0X|1|L5|C|196
8Y0X|1|L5|A|197
8Y0X|1|L5|A|198
8Y0X|1|L5|G|199
*
8Y0X|1|L5|C|215
8Y0X|1|L5|C|216
8Y0X|1|L5|C|217
8Y0X|1|L5|A|218
8Y0X|1|L5|G|219
8Y0X|1|L5|C|220
8Y0X|1|L5|C|221
8Y0X|1|L5|C|222
8Y0X|1|L5|G|223
8Y0X|1|L5|U|224
8Y0X|1|L5|G|225
8Y0X|1|L5|G|226
8Y0X|1|L5|A|227
8Y0X|1|L5|C|228
*
8Y0X|1|L5|G|240
8Y0X|1|L5|G|241
8Y0X|1|L5|U|242
8Y0X|1|L5|A|243
8Y0X|1|L5|G|244

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26