J3_8Y0X_025

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAGUC*GUGCG*CGACG

Length

15 nucleotides

Bulged bases

8Y0X|1|L5|C|704, 8Y0X|1|L5|C|1295

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y0X|1|L5|C|451
8Y0X|1|L5|A|452
8Y0X|1|L5|G|453
8Y0X|1|L5|U|454
8Y0X|1|L5|C|455
*
8Y0X|1|L5|G|701
8Y0X|1|L5|U|702
8Y0X|1|L5|G|703
8Y0X|1|L5|C|704
8Y0X|1|L5|G|705
*
8Y0X|1|L5|C|1292
8Y0X|1|L5|G|1293
8Y0X|1|L5|A|1294
8Y0X|1|L5|C|1295
8Y0X|1|L5|G|1296

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain Le

60S ribosomal protein L32

Chain Lf

60S ribosomal protein L35a