J3_8Y0X_026

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

8Y0X|1|L5|C|962, 8Y0X|1|L5|G|965, 8Y0X|1|L5|C|967, 8Y0X|1|L5|C|968, 8Y0X|1|L5|C|969, 8Y0X|1|L5|U|971, 8Y0X|1|L5|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y0X|1|L5|C|712
8Y0X|1|L5|C|713
*
8Y0X|1|L5|G|955
8Y0X|1|L5|A|956
8Y0X|1|L5|G|957
8Y0X|1|L5|G|958
8Y0X|1|L5|G|959
8Y0X|1|L5|A|960
8Y0X|1|L5|G|961
8Y0X|1|L5|C|962
8Y0X|1|L5|G|963
8Y0X|1|L5|A|964
8Y0X|1|L5|G|965
8Y0X|1|L5|A|966
8Y0X|1|L5|C|967
8Y0X|1|L5|C|968
8Y0X|1|L5|C|969
8Y0X|1|L5|G|970
8Y0X|1|L5|U|971
8Y0X|1|L5|C|972
8Y0X|1|L5|G|973
8Y0X|1|L5|C|974
8Y0X|1|L5|C|975
8Y0X|1|L5|G|976
*
8Y0X|1|L5|C|1278
8Y0X|1|L5|A|1279
8Y0X|1|L5|C|1280
8Y0X|1|L5|G|1281
8Y0X|1|L5|G|1282
8Y0X|1|L5|G|1283
8Y0X|1|L5|G|1284

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

60S ribosomal protein L6

Chain LF

60S ribosomal protein L7

Chain Le

60S ribosomal protein L32