J3_8Y0X_034

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

8Y0X|1|L5|U|4882, 8Y0X|1|L5|A|4938, 8Y0X|1|L5|C|4940, 8Y0X|1|L5|A|4943, 8Y0X|1|L5|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y0X|1|L5|G|4751
8Y0X|1|L5|U|4752
8Y0X|1|L5|U|4753
8Y0X|1|L5|G|4754
*
8Y0X|1|L5|C|4879
8Y0X|1|L5|C|4880
8Y0X|1|L5|U|4881
8Y0X|1|L5|U|4882
8Y0X|1|L5|C|4883
*
8Y0X|1|L5|G|4936
8Y0X|1|L5|C|4937
8Y0X|1|L5|A|4938
8Y0X|1|L5|C|4939
8Y0X|1|L5|C|4940
8Y0X|1|L5|G|4941
8Y0X|1|L5|C|4942
8Y0X|1|L5|A|4943
8Y0X|1|L5|C|4944
8Y0X|1|L5|G|4945
8Y0X|1|L5|U|4946
8Y0X|1|L5|U|4947
8Y0X|1|L5|C|4948

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L35a