J3_8Y38_001
3D structure
- PDB id
- 8Y38 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- UGAUCUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 8Y38|1|A|U|731, 8Y38|1|A|G|837, 8Y38|1|A|A|838
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8Y38_001 not in the Motif Atlas
- Homologous match to J3_5J7L_038
- Geometric discrepancy: 0.0903
- The information below is about J3_5J7L_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64189.2
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8Y38|1|A|U|728
8Y38|1|A|G|729
8Y38|1|A|A|730
8Y38|1|A|U|731
8Y38|1|A|C|732
8Y38|1|A|U|733
8Y38|1|A|A|734
*
8Y38|1|A|U|818
8Y38|1|A|A|819
8Y38|1|A|G|820
*
8Y38|1|A|C|836
8Y38|1|A|G|837
8Y38|1|A|A|838
8Y38|1|A|A|839
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein bL34
- Chain C
- Large ribosomal subunit protein uL2
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