J3_8Y38_009

3D structure

PDB id

8Y38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

CAA*UUAUAAG*CGAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y38|1|A|C|2816
8Y38|1|A|A|2817
8Y38|1|A|A|2818
*
8Y38|1|A|U|2825
8Y38|1|A|U|2826
8Y38|1|A|A|2827
8Y38|1|A|U|2828
8Y38|1|A|A|2829
8Y38|1|A|A|2830
8Y38|1|A|G|2831
*
8Y38|1|A|C|2909
8Y38|1|A|G|2910
8Y38|1|A|A|2911
8Y38|1|A|A|2912
8Y38|1|A|G|2913

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3