3D structure

PDB id
8Y38 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.58 Å

Loop

Sequence
CUUGACAUC*GACAG*CUUAUG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8Y38|1|a|C|999
8Y38|1|a|U|1000
8Y38|1|a|U|1001
8Y38|1|a|G|1002
8Y38|1|a|A|1003
8Y38|1|a|C|1004
8Y38|1|a|A|1005
8Y38|1|a|U|1006
8Y38|1|a|C|1007
*
8Y38|1|a|G|1054
8Y38|1|a|A|1055
8Y38|1|a|C|1056
8Y38|1|a|A|1057
8Y38|1|a|G|1058
*
8Y38|1|a|C|1220
8Y38|1|a|U|1221
8Y38|1|a|U|1222
8Y38|1|a|A|1223
8Y38|1|a|U|1224
8Y38|1|a|G|1225

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain n
Small ribosomal subunit protein uS14B

Coloring options:

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