J3_8Y38_034
3D structure
- PDB id
- 8Y38 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- UAA*UGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 8Y38|1|a|U|1193
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8Y38_034 not in the Motif Atlas
- Homologous match to J3_5J7L_054
- Geometric discrepancy: 0.169
- The information below is about J3_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8Y38|1|a|U|1127
8Y38|1|a|A|1128
8Y38|1|a|A|1129
*
8Y38|1|a|U|1165
8Y38|1|a|G|1166
8Y38|1|a|A|1167
8Y38|1|a|C|1168
8Y38|1|a|U|1169
8Y38|1|a|G|1170
8Y38|1|a|C|1171
*
8Y38|1|a|G|1185
8Y38|1|a|A|1186
8Y38|1|a|G|1187
8Y38|1|a|G|1188
8Y38|1|a|A|1189
8Y38|1|a|A|1190
8Y38|1|a|G|1191
8Y38|1|a|G|1192
8Y38|1|a|U|1193
8Y38|1|a|G|1194
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain b
- Small ribosomal subunit protein uS2
- Chain i
- Small ribosomal subunit protein uS9
- Chain j
- Small ribosomal subunit protein uS10
- Chain n
- Small ribosomal subunit protein uS14B
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