J3_8Y39_001

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAUCUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

8Y39|1|A|U|731, 8Y39|1|A|G|837, 8Y39|1|A|A|838

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Y39_001 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0903

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8Y39|1|A|U|728
8Y39|1|A|G|729
8Y39|1|A|A|730
8Y39|1|A|U|731
8Y39|1|A|C|732
8Y39|1|A|U|733
8Y39|1|A|A|734
*
8Y39|1|A|U|818
8Y39|1|A|A|819
8Y39|1|A|G|820
*
8Y39|1|A|C|836
8Y39|1|A|G|837
8Y39|1|A|A|838
8Y39|1|A|A|839

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34

Chain C

Large ribosomal subunit protein uL2