J3_8Y39_003

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAUUG*CAA*UAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Y39_003 not in the Motif Atlas

Homologous match to J3_4WF9_004

Geometric discrepancy: 0.1397

The information below is about J3_4WF9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8Y39|1|A|C|1335
8Y39|1|A|G|1336
8Y39|1|A|A|1337
8Y39|1|A|U|1338
8Y39|1|A|U|1339
8Y39|1|A|G|1340
*
8Y39|1|A|C|1669
8Y39|1|A|A|1670
8Y39|1|A|A|1671
*
8Y39|1|A|U|1683
8Y39|1|A|A|1684
8Y39|1|A|A|1685
8Y39|1|A|G|1686

Current chains

Chain A

23S ribosomal RNA

Nearby chains