J3_8Y39_006
3D structure
- PDB id
- 8Y39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GCUC*GACUUAGUGAUCC*GCUCAAC
- Length
- 24 nucleotides
- Bulged bases
- 8Y39|1|A|A|2453
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8Y39_006 not in the Motif Atlas
- Homologous match to J3_4WF9_019
- Geometric discrepancy: 0.1086
- The information below is about J3_4WF9_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39320.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-F-F-F-F-F-F-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
8Y39|1|A|G|2309
8Y39|1|A|C|2310
8Y39|1|A|U|2311
8Y39|1|A|C|2312
*
8Y39|1|A|G|2410
8Y39|1|A|A|2411
8Y39|1|A|C|2412
8Y39|1|A|U|2413
8Y39|1|A|U|2414
8Y39|1|A|A|2415
8Y39|1|A|G|2416
8Y39|1|A|U|2417
8Y39|1|A|G|2418
8Y39|1|A|A|2419
8Y39|1|A|U|2420
8Y39|1|A|C|2421
8Y39|1|A|C|2422
*
8Y39|1|A|G|2448
8Y39|1|A|C|2449
8Y39|1|A|U|2450
8Y39|1|A|C|2451
8Y39|1|A|A|2452
8Y39|1|A|A|2453
8Y39|1|A|C|2454
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein bL33B
- Chain 3
- Large ribosomal subunit protein bL35
- Chain J
- Large ribosomal subunit protein uL15
- Chain U
- Large ribosomal subunit protein bL27
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