J3_8Y39_009

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAA*UUAUAAG*CGAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y39|1|A|C|2816
8Y39|1|A|A|2817
8Y39|1|A|A|2818
*
8Y39|1|A|U|2825
8Y39|1|A|U|2826
8Y39|1|A|A|2827
8Y39|1|A|U|2828
8Y39|1|A|A|2829
8Y39|1|A|A|2830
8Y39|1|A|G|2831
*
8Y39|1|A|C|2909
8Y39|1|A|G|2910
8Y39|1|A|A|2911
8Y39|1|A|A|2912
8Y39|1|A|G|2913

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3