J3_8Y39_012
3D structure
- PDB id
- 8Y39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8Y39_012 not in the Motif Atlas
- Homologous match to J3_5J7L_005
- Geometric discrepancy: 0.1557
- The information below is about J3_5J7L_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.4
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8Y39|1|a|U|952
8Y39|1|a|G|953
8Y39|1|a|G|954
8Y39|1|a|A|955
*
8Y39|1|a|U|1245
8Y39|1|a|A|1246
8Y39|1|a|C|1247
*
8Y39|1|a|G|1347
8Y39|1|a|G|1348
8Y39|1|a|A|1349
8Y39|1|a|A|1350
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain i
- Small ribosomal subunit protein uS9
- Chain m
- Small ribosomal subunit protein uS13
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