J3_8Y39_014

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUUG*CAG*CUUAUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Y39_014 not in the Motif Atlas

Homologous match to J3_5J7L_007

Geometric discrepancy: 0.1161

The information below is about J3_5J7L_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

8Y39|1|a|C|999
8Y39|1|a|U|1000
8Y39|1|a|U|1001
8Y39|1|a|G|1002
*
8Y39|1|a|C|1056
8Y39|1|a|A|1057
8Y39|1|a|G|1058
*
8Y39|1|a|C|1220
8Y39|1|a|U|1221
8Y39|1|a|U|1222
8Y39|1|a|A|1223
8Y39|1|a|U|1224
8Y39|1|a|G|1225

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain n

Small ribosomal subunit protein uS14B