J3_8Y39_021
3D structure
- PDB id
- 8Y39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AC*GAUAUGC*GAUUU
- Length
- 14 nucleotides
- Bulged bases
- 8Y39|1|A|U|72, 8Y39|1|A|U|74
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8Y39_021 not in the Motif Atlas
- Homologous match to J3_4WF9_013
- Geometric discrepancy: 0.1168
- The information below is about J3_4WF9_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.1
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
8Y39|1|A|A|56
8Y39|1|A|C|57
*
8Y39|1|A|G|70
8Y39|1|A|A|71
8Y39|1|A|U|72
8Y39|1|A|A|73
8Y39|1|A|U|74
8Y39|1|A|G|75
8Y39|1|A|C|76
*
8Y39|1|A|G|109
8Y39|1|A|A|110
8Y39|1|A|U|111
8Y39|1|A|U|112
8Y39|1|A|U|113
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein bL34
- Chain R
- Large ribosomal subunit protein uL23
- Chain W
- Large ribosomal subunit protein uL29
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