J3_8Y39_027

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GC*GGAAUCU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Y39_027 not in the Motif Atlas

Geometric match to J3_5J7L_001

Geometric discrepancy: 0.0927

The information below is about J3_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8Y39|1|a|G|47
8Y39|1|a|C|48
*
8Y39|1|a|G|369
8Y39|1|a|G|370
8Y39|1|a|A|371
8Y39|1|a|A|372
8Y39|1|a|U|373
8Y39|1|a|C|374
8Y39|1|a|U|375
*
8Y39|1|a|A|401
8Y39|1|a|G|402
8Y39|1|a|C|403

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain l

Small ribosomal subunit protein uS12

Chain p

Small ribosomal subunit protein bS16