J3_8Y39_035

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUUGACAU*ACAG*CUUAUG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Y39_035 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1317

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

8Y39|1|a|C|999
8Y39|1|a|U|1000
8Y39|1|a|U|1001
8Y39|1|a|G|1002
8Y39|1|a|A|1003
8Y39|1|a|C|1004
8Y39|1|a|A|1005
8Y39|1|a|U|1006
*
8Y39|1|a|A|1055
8Y39|1|a|C|1056
8Y39|1|a|A|1057
8Y39|1|a|G|1058
*
8Y39|1|a|C|1220
8Y39|1|a|U|1221
8Y39|1|a|U|1222
8Y39|1|a|A|1223
8Y39|1|a|U|1224
8Y39|1|a|G|1225

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain n

Small ribosomal subunit protein uS14B