J3_8YDE_001

3D structure

PDB id

8YDE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 1 (subclass 3) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8YDE_001 not in the Motif Atlas

Geometric match to J3_8B0X_014

Geometric discrepancy: 0.1023

The information below is about J3_8B0X_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

10

Unit IDs

8YDE|1|1|G|30
8YDE|1|1|C|31
*
8YDE|1|1|G|474
8YDE|1|1|C|475
8YDE|1|1|G|476
8YDE|1|1|A|477
8YDE|1|1|A|478
8YDE|1|1|A|479
8YDE|1|1|A|480
8YDE|1|1|G|481
*
8YDE|1|1|C|509
8YDE|1|1|C|510

Current chains

Chain 1

23S rRNA

Nearby chains

Chain q

50S ribosomal protein L20

Chain u

50S ribosomal protein L24