J3_8YDE_021
3D structure
- PDB id
- 8YDE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 1 (subclass 3) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- GCCUAAC*GGGGAAUAU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 8YDE|1|3|C|48, 8YDE|1|3|A|51
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8YDE_021 not in the Motif Atlas
- Geometric match to J3_8B0X_027
- Geometric discrepancy: 0.0964
- The information below is about J3_8B0X_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.1
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8YDE|1|3|G|46
8YDE|1|3|C|47
8YDE|1|3|C|48
8YDE|1|3|U|49
8YDE|1|3|A|50
8YDE|1|3|A|51
8YDE|1|3|C|52
*
8YDE|1|3|G|359
8YDE|1|3|G|360
8YDE|1|3|G|361
8YDE|1|3|G|362
8YDE|1|3|A|363
8YDE|1|3|A|364
8YDE|1|3|U|365
8YDE|1|3|A|366
8YDE|1|3|U|367
*
8YDE|1|3|A|393
8YDE|1|3|G|394
8YDE|1|3|C|395
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain Q
- 30S ribosomal protein S12
- Chain U
- 30S ribosomal protein S16
Coloring options: