J3_8YDE_025

3D structure

PDB id

8YDE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 1 (subclass 3) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

8YDE|1|3|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YDE|1|3|C|826
8YDE|1|3|U|827
8YDE|1|3|U|828
8YDE|1|3|G|829
*
8YDE|1|3|C|857
8YDE|1|3|G|858
8YDE|1|3|G|859
8YDE|1|3|A|860
8YDE|1|3|G|861
*
8YDE|1|3|C|868
8YDE|1|3|G|869
8YDE|1|3|U|870
8YDE|1|3|U|871
8YDE|1|3|A|872
8YDE|1|3|A|873
8YDE|1|3|G|874

Current chains

Chain 3

16S rRNA

Nearby chains

Chain G

30S ribosomal protein S2

Chain M

30S ribosomal protein S8

Chain Z

30S ribosomal protein S21