J3_8YDF_004
3D structure
- PDB id
- 8YDF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- AC*GAUAAGC*GAUUU
- Length
- 14 nucleotides
- Bulged bases
- 8YDF|1|1|U|72, 8YDF|1|1|A|74
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8YDF_004 not in the Motif Atlas
- Geometric match to J3_8B0X_015
- Geometric discrepancy: 0.1186
- The information below is about J3_8B0X_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.1
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
8YDF|1|1|A|56
8YDF|1|1|C|57
*
8YDF|1|1|G|70
8YDF|1|1|A|71
8YDF|1|1|U|72
8YDF|1|1|A|73
8YDF|1|1|A|74
8YDF|1|1|G|75
8YDF|1|1|C|76
*
8YDF|1|1|G|110
8YDF|1|1|A|111
8YDF|1|1|U|112
8YDF|1|1|U|113
8YDF|1|1|U|114
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain D
- 50S ribosomal protein L34
- Chain t
- 50S ribosomal protein L23
- Chain y
- 50S ribosomal protein L29
Coloring options: