J3_8YDF_015
3D structure
- PDB id
- 8YDF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- CUAAU*AGGUUAG*CAUAAG
- Length
- 18 nucleotides
- Bulged bases
- 8YDF|1|1|U|2334, 8YDF|1|1|A|2336
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YDF|1|1|C|2295
8YDF|1|1|U|2296
8YDF|1|1|A|2297
8YDF|1|1|A|2298
8YDF|1|1|U|2299
*
8YDF|1|1|A|2317
8YDF|1|1|G|2318
8YDF|1|1|G|2319
8YDF|1|1|U|2320
8YDF|1|1|U|2321
8YDF|1|1|A|2322
8YDF|1|1|G|2323
*
8YDF|1|1|C|2332
8YDF|1|1|A|2333
8YDF|1|1|U|2334
8YDF|1|1|A|2335
8YDF|1|1|A|2336
8YDF|1|1|G|2337
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 2
- 5S ribosomal RNA; 5S rRNA
- Chain 6
- Transfer RNA; tRNA
- Chain e
- 50S ribosomal protein L5
- Chain o
- 50S ribosomal protein L18
- Chain w
- 50S ribosomal protein L27
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