J3_8YDF_028
3D structure
- PDB id
- 8YDF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 8YDF|1|3|A|975, 8YDF|1|3|G|976, 8YDF|1|3|A|978
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8YDF_028 not in the Motif Atlas
- Geometric match to J3_4LFB_004
- Geometric discrepancy: 0.0846
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8YDF|1|3|U|955
8YDF|1|3|U|956
8YDF|1|3|U|957
8YDF|1|3|A|958
8YDF|1|3|A|959
8YDF|1|3|U|960
8YDF|1|3|U|961
8YDF|1|3|C|962
*
8YDF|1|3|G|973
8YDF|1|3|A|974
8YDF|1|3|A|975
8YDF|1|3|G|976
8YDF|1|3|A|977
8YDF|1|3|A|978
8YDF|1|3|C|979
8YDF|1|3|C|980
8YDF|1|3|U|981
8YDF|1|3|U|982
8YDF|1|3|A|983
8YDF|1|3|C|984
*
8YDF|1|3|G|1221
8YDF|1|3|G|1222
8YDF|1|3|C|1223
8YDF|1|3|U|1224
8YDF|1|3|A|1225
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain 5
- Transfer RNA; tRNA
- Chain O
- 30S ribosomal protein S10
- Chain R
- 30S ribosomal protein S13
- Chain S
- 30S ribosomal protein S14
- Chain X
- 30S ribosomal protein S19
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