J3_8YDF_035
3D structure
- PDB id
- 8YDF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- CAAUG*CGUAGUCC*GUCG
- Length
- 17 nucleotides
- Bulged bases
- 8YDF|1|3|U|1240, 8YDF|1|3|C|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8YDF_035 not in the Motif Atlas
- Geometric match to J3_8B0X_013
- Geometric discrepancy: 0.1248
- The information below is about J3_8B0X_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03192.1
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F
- Number of instances in this motif group
- 5
Unit IDs
8YDF|1|3|C|1237
8YDF|1|3|A|1238
8YDF|1|3|A|1239
8YDF|1|3|U|1240
8YDF|1|3|G|1241
*
8YDF|1|3|C|1296
8YDF|1|3|G|1297
8YDF|1|3|U|1298
8YDF|1|3|A|1299
8YDF|1|3|G|1300
8YDF|1|3|U|1301
8YDF|1|3|C|1302
8YDF|1|3|C|1303
*
8YDF|1|3|G|1334
8YDF|1|3|U|1335
8YDF|1|3|C|1336
8YDF|1|3|G|1337
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain 7
- Transfer RNA; tRNA
- Chain L
- 30S ribosomal protein S7
- Chain R
- 30S ribosomal protein S13
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