J3_8YDJ_020

3D structure

PDB id

8YDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

GC*GGAAUAUUG*CAGC

Length

15 nucleotides

Bulged bases

8YDJ|1|3|U|368

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YDJ|1|3|G|46
8YDJ|1|3|C|47
*
8YDJ|1|3|G|361
8YDJ|1|3|G|362
8YDJ|1|3|A|363
8YDJ|1|3|A|364
8YDJ|1|3|U|365
8YDJ|1|3|A|366
8YDJ|1|3|U|367
8YDJ|1|3|U|368
8YDJ|1|3|G|369
*
8YDJ|1|3|C|392
8YDJ|1|3|A|393
8YDJ|1|3|G|394
8YDJ|1|3|C|395

Current chains

Chain 3

16S rRNA

Nearby chains

Chain 0

Elongation factor G

Chain Q

30S ribosomal protein S12

Chain U

30S ribosomal protein S16