J3_8YLD_008

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

ACCACCAG*CUAGUAA*UGAUUACGUCCCU

Length

28 nucleotides

Bulged bases

8YLD|1|2|C|1159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YLD|1|2|A|1157
8YLD|1|2|C|1158
8YLD|1|2|C|1159
8YLD|1|2|A|1160
8YLD|1|2|C|1161
8YLD|1|2|C|1162
8YLD|1|2|A|1163
8YLD|1|2|G|1164
*
8YLD|1|2|C|1581
8YLD|1|2|U|1582
8YLD|1|2|A|1583
8YLD|1|2|G|1584
8YLD|1|2|U|1585
8YLD|1|2|A|1586
8YLD|1|2|A|1587
*
8YLD|1|2|U|1609
8YLD|1|2|G|1610
8YLD|1|2|A|1611
8YLD|1|2|U|1612
8YLD|1|2|U|1613
8YLD|1|2|A|1614
8YLD|1|2|C|1615
8YLD|1|2|G|1616
8YLD|1|2|U|1617
8YLD|1|2|C|1618
8YLD|1|2|C|1619
8YLD|1|2|C|1620
8YLD|1|2|U|1621

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SB

Small ribosomal subunit protein uS7

Chain SF

Small ribosomal subunit protein uS9A

Chain SL

Small ribosomal subunit protein eS28A

Chain Se

Small ribosomal subunit protein eS26A

Chain t

Transfer RNA; tRNA