J3_8YLD_013

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUAG*CGAGAC*GCA

Length

13 nucleotides

Bulged bases

8YLD|1|2|A|1287

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YLD|1|2|U|1285
8YLD|1|2|U|1286
8YLD|1|2|A|1287
8YLD|1|2|G|1288
*
8YLD|1|2|C|1327
8YLD|1|2|G|1328
8YLD|1|2|A|1329
8YLD|1|2|G|1330
8YLD|1|2|A|1331
8YLD|1|2|C|1332
*
8YLD|1|2|G|1419
8YLD|1|2|C|1420
8YLD|1|2|A|1421

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SA

Small ribosomal subunit protein uS3

Chain SF

Small ribosomal subunit protein uS9A

Chain SG

Small ribosomal subunit protein eS17A

Chain SJ

Small ribosomal subunit protein uS10

Chain SM

Small ribosomal subunit protein uS14A