J3_8YLD_020
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 8YLD|1|A|U|343, 8YLD|1|A|A|351, 8YLD|1|C|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YLD|1|A|C|340
8YLD|1|A|G|341
8YLD|1|A|A|342
8YLD|1|A|U|343
8YLD|1|A|A|344
8YLD|1|A|G|345
8YLD|1|A|C|346
8YLD|1|A|G|347
8YLD|1|A|A|348
8YLD|1|A|A|349
8YLD|1|A|C|350
8YLD|1|A|A|351
8YLD|1|A|A|352
8YLD|1|A|G|353
8YLD|1|A|U|354
8YLD|1|A|A|355
8YLD|1|A|C|356
*
8YLD|1|A|G|363
8YLD|1|A|G|364
8YLD|1|A|A|365
8YLD|1|A|A|366
8YLD|1|A|A|367
8YLD|1|A|G|368
*
8YLD|1|C|C|21
8YLD|1|C|U|22
8YLD|1|C|U|23
8YLD|1|C|G|24
Current chains
- Chain A
- 25S rRNA
- Chain C
- 5.8S rRNA
Nearby chains
- Chain F
- Large ribosomal subunit protein uL4A
- Chain a
- Large ribosomal subunit protein uL24A
- Chain l
- Large ribosomal subunit protein eL37A
- Chain n
- Large ribosomal subunit protein eL39
Coloring options: