J3_8YLD_026

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAC*GCUAAGGAGUGU*ACUCAC

Length

21 nucleotides

Bulged bases

8YLD|1|A|A|1263, 8YLD|1|A|G|1264

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YLD|1|A|G|1230
8YLD|1|A|A|1231
8YLD|1|A|C|1232
*
8YLD|1|A|G|1256
8YLD|1|A|C|1257
8YLD|1|A|U|1258
8YLD|1|A|A|1259
8YLD|1|A|A|1260
8YLD|1|A|G|1261
8YLD|1|A|G|1262
8YLD|1|A|A|1263
8YLD|1|A|G|1264
8YLD|1|A|U|1265
8YLD|1|A|G|1266
8YLD|1|A|U|1267
*
8YLD|1|A|A|1274
8YLD|1|A|C|1275
8YLD|1|A|U|1276
8YLD|1|A|C|1277
8YLD|1|A|A|1278
8YLD|1|A|C|1279

Current chains

Chain A

25S rRNA

Nearby chains

Chain o

Large ribosomal subunit protein eL40A