J3_8YLD_030
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GAGAUGG*CGUUUCAAAGG*CACCAUC
- Length
- 25 nucleotides
- Bulged bases
- 8YLD|1|A|C|1556, 8YLD|1|A|A|1558, 8YLD|1|A|A|1580, 8YLD|1|A|C|1581
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YLD|1|A|G|1536
8YLD|1|A|A|1537
8YLD|1|A|G|1538
8YLD|1|A|A|1539
8YLD|1|A|U|1540
8YLD|1|A|G|1541
8YLD|1|A|G|1542
*
8YLD|1|A|C|1551
8YLD|1|A|G|1552
8YLD|1|A|U|1553
8YLD|1|A|U|1554
8YLD|1|A|U|1555
8YLD|1|A|C|1556
8YLD|1|A|A|1557
8YLD|1|A|A|1558
8YLD|1|A|A|1559
8YLD|1|A|G|1560
8YLD|1|A|G|1561
*
8YLD|1|A|C|1579
8YLD|1|A|A|1580
8YLD|1|A|C|1581
8YLD|1|A|C|1582
8YLD|1|A|A|1583
8YLD|1|A|U|1584
8YLD|1|A|C|1585
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain D
- Large ribosomal subunit protein uL2A
- Chain J
- Large ribosomal subunit protein eL8A
- Chain P
- Large ribosomal subunit protein eL15A
- Chain Z
- Large ribosomal subunit protein uL23
- Chain l
- Large ribosomal subunit protein eL37A
Coloring options: