J3_8YLD_033
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AUUGUG*UACUUAUU*AAGACAUU
- Length
- 22 nucleotides
- Bulged bases
- 8YLD|1|A|U|2514
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YLD|1|A|A|2432
8YLD|1|A|U|2433
8YLD|1|A|U|2434
8YLD|1|A|G|2435
8YLD|1|A|U|2436
8YLD|1|A|G|2437
*
8YLD|1|A|U|2510
8YLD|1|A|A|2511
8YLD|1|A|C|2512
8YLD|1|A|U|2513
8YLD|1|A|U|2514
8YLD|1|A|A|2515
8YLD|1|A|U|2516
8YLD|1|A|U|2517
*
8YLD|1|A|A|2590
8YLD|1|A|A|2591
8YLD|1|A|G|2592
8YLD|1|A|A|2593
8YLD|1|A|C|2594
8YLD|1|A|A|2595
8YLD|1|A|U|2596
8YLD|1|A|U|2597
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain D
- Large ribosomal subunit protein uL2A
- Chain J
- Large ribosomal subunit protein eL8A
- Chain P
- Large ribosomal subunit protein eL15A
- Chain SQ
- Small ribosomal subunit protein eS1A
- Chain k
- Large ribosomal subunit protein eL36A
Coloring options: