Loop J3_8YLD

3D structure

PDB id: 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
Description: State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å

Loop

Sequence: AUAUAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCAUUU
Length: 36 nucleotides
Bulged bases: 8YLD|1|A|A|3172, 8YLD|1|A|G|3173, 8YLD|1|A|A|3215, 8YLD|1|A|G|3216, 8YLD|1|A|G|3219, 8YLD|1|A|A|3268, 8YLD|1|A|U|3270, 8YLD|1|A|C|3272, 8YLD|1|A|U|3277
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8YLD|1|A|A|3168
8YLD|1|A|U|3169
8YLD|1|A|A|3170
8YLD|1|A|U|3171
8YLD|1|A|A|3172
8YLD|1|A|G|3173
8YLD|1|A|A|3174
8YLD|1|A|U|3175
8YLD|1|A|G|3176
*
8YLD|1|A|C|3212
8YLD|1|A|A|3213
8YLD|1|A|U|3214
8YLD|1|A|A|3215
8YLD|1|A|G|3216
8YLD|1|A|C|3217
8YLD|1|A|A|3218
8YLD|1|A|G|3219
8YLD|1|A|G|3220
*
8YLD|1|A|C|3265
8YLD|1|A|G|3266
8YLD|1|A|A|3267
8YLD|1|A|A|3268
8YLD|1|A|U|3269
8YLD|1|A|U|3270
8YLD|1|A|G|3271
8YLD|1|A|C|3272
8YLD|1|A|A|3273
8YLD|1|A|A|3274
8YLD|1|A|U|3275
8YLD|1|A|G|3276
8YLD|1|A|U|3277
8YLD|1|A|C|3278
8YLD|1|A|A|3279
8YLD|1|A|U|3280
8YLD|1|A|U|3281
8YLD|1|A|U|3282

Current chains

Chain A: 25S rRNA

Nearby chains

Chain H: Large ribosomal subunit protein eL6B
Chain O: Large ribosomal subunit protein eL14A
Chain Q: Large ribosomal subunit protein uL13A
Chain R: Large ribosomal subunit protein uL22A
Chain h: Large ribosomal subunit protein eL33A

J3_8YLD_037