J3_8YOO_027

3D structure

PDB id

8YOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

8YOO|1|L5|G|959, 8YOO|1|L5|C|962, 8YOO|1|L5|G|965, 8YOO|1|L5|C|967, 8YOO|1|L5|C|968, 8YOO|1|L5|C|969, 8YOO|1|L5|U|971, 8YOO|1|L5|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YOO|1|L5|C|712
8YOO|1|L5|C|713
*
8YOO|1|L5|G|955
8YOO|1|L5|A|956
8YOO|1|L5|G|957
8YOO|1|L5|G|958
8YOO|1|L5|G|959
8YOO|1|L5|A|960
8YOO|1|L5|G|961
8YOO|1|L5|C|962
8YOO|1|L5|G|963
8YOO|1|L5|A|964
8YOO|1|L5|G|965
8YOO|1|L5|A|966
8YOO|1|L5|C|967
8YOO|1|L5|C|968
8YOO|1|L5|C|969
8YOO|1|L5|G|970
8YOO|1|L5|U|971
8YOO|1|L5|C|972
8YOO|1|L5|G|973
8YOO|1|L5|C|974
8YOO|1|L5|C|975
8YOO|1|L5|G|976
*
8YOO|1|L5|C|1278
8YOO|1|L5|A|1279
8YOO|1|L5|C|1280
8YOO|1|L5|G|1281
8YOO|1|L5|G|1282
8YOO|1|L5|G|1283
8YOO|1|L5|G|1284

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

60S ribosomal protein L6

Chain LF

60S ribosomal protein L7

Chain Le

60S ribosomal protein L32