J3_8YOP_023

3D structure

PDB id

8YOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

8YOP|1|L5|G|219, 8YOP|1|L5|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YOP|1|L5|C|196
8YOP|1|L5|A|197
8YOP|1|L5|A|198
8YOP|1|L5|G|199
*
8YOP|1|L5|C|215
8YOP|1|L5|C|216
8YOP|1|L5|C|217
8YOP|1|L5|A|218
8YOP|1|L5|G|219
8YOP|1|L5|C|220
8YOP|1|L5|C|221
8YOP|1|L5|C|222
8YOP|1|L5|G|223
8YOP|1|L5|U|224
8YOP|1|L5|G|225
8YOP|1|L5|G|226
8YOP|1|L5|A|227
8YOP|1|L5|C|228
*
8YOP|1|L5|G|240
8YOP|1|L5|G|241
8YOP|1|L5|U|242
8YOP|1|L5|A|243
8YOP|1|L5|G|244

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26