J3_8YOP_028

3D structure

PDB id

8YOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

8YOP|1|L5|G|959, 8YOP|1|L5|G|965, 8YOP|1|L5|C|967, 8YOP|1|L5|U|971, 8YOP|1|L5|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YOP|1|L5|C|712
8YOP|1|L5|C|713
*
8YOP|1|L5|G|955
8YOP|1|L5|A|956
8YOP|1|L5|G|957
8YOP|1|L5|G|958
8YOP|1|L5|G|959
8YOP|1|L5|A|960
8YOP|1|L5|G|961
8YOP|1|L5|C|962
8YOP|1|L5|G|963
8YOP|1|L5|A|964
8YOP|1|L5|G|965
8YOP|1|L5|A|966
8YOP|1|L5|C|967
8YOP|1|L5|C|968
8YOP|1|L5|C|969
8YOP|1|L5|G|970
8YOP|1|L5|U|971
8YOP|1|L5|C|972
8YOP|1|L5|G|973
8YOP|1|L5|C|974
8YOP|1|L5|C|975
8YOP|1|L5|G|976
*
8YOP|1|L5|C|1278
8YOP|1|L5|A|1279
8YOP|1|L5|C|1280
8YOP|1|L5|G|1281
8YOP|1|L5|G|1282
8YOP|1|L5|G|1283
8YOP|1|L5|G|1284

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

60S ribosomal protein L6

Chain LF

60S ribosomal protein L7

Chain Le

60S ribosomal protein L32