J3_8YOP_035
3D structure
- PDB id
- 8YOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GGGGGCG*CUCGCUUCUGGCGCCAAG*CGAC
- Length
- 29 nucleotides
- Bulged bases
- 8YOP|1|L5|G|4115, 8YOP|1|L5|C|4116, 8YOP|1|L5|U|4117, 8YOP|1|L5|U|4118, 8YOP|1|L5|C|4119, 8YOP|1|L5|U|4120, 8YOP|1|L5|G|4121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YOP|1|L5|G|4091
8YOP|1|L5|G|4092
8YOP|1|L5|G|4093
8YOP|1|L5|G|4094
8YOP|1|L5|G|4095
8YOP|1|L5|C|4096
8YOP|1|L5|G|4097
*
8YOP|1|L5|C|4112
8YOP|1|L5|U|4113
8YOP|1|L5|C|4114
8YOP|1|L5|G|4115
8YOP|1|L5|C|4116
8YOP|1|L5|U|4117
8YOP|1|L5|U|4118
8YOP|1|L5|C|4119
8YOP|1|L5|U|4120
8YOP|1|L5|G|4121
8YOP|1|L5|G|4122
8YOP|1|L5|C|4123
8YOP|1|L5|G|4124
8YOP|1|L5|C|4125
8YOP|1|L5|C|4126
8YOP|1|L5|A|4127
8YOP|1|L5|A|4128
8YOP|1|L5|G|4129
*
8YOP|1|L5|C|4155
8YOP|1|L5|G|4156
8YOP|1|L5|A|4157
8YOP|1|L5|C|4158
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain LG
- 60S ribosomal protein L7a
- Chain LX
- 60S ribosomal protein L23a
- Chain LZ
- 60S ribosomal protein L27
- Chain Lc
- 60S ribosomal protein L30
- Chain Lg
- 60S ribosomal protein L34
- Chain Lp
- 60S ribosomal protein L37a
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