J3_8YP6_007

3D structure

PDB id

8YP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM map of 30S ribosomal subunit in complex with MetAP1c of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GCACAAG*CUAGUAA*UGAAUACGUUCCC

Length

27 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YP6|1|a|G|915
8YP6|1|a|C|916
8YP6|1|a|A|917
8YP6|1|a|C|918
8YP6|1|a|A|919
8YP6|1|a|A|920
8YP6|1|a|G|921
*
8YP6|1|a|C|1326
8YP6|1|a|U|1327
8YP6|1|a|A|1328
8YP6|1|a|G|1329
8YP6|1|a|U|1330
8YP6|1|a|A|1331
8YP6|1|a|A|1332
*
8YP6|1|a|U|1355
8YP6|1|a|G|1356
8YP6|1|a|A|1357
8YP6|1|a|A|1358
8YP6|1|a|U|1359
8YP6|1|a|A|1360
8YP6|1|a|C|1361
8YP6|1|a|G|1362
8YP6|1|a|U|1363
8YP6|1|a|U|1364
8YP6|1|a|C|1365
8YP6|1|a|C|1366
8YP6|1|a|C|1367

Current chains

Chain a

16S rRNA

Nearby chains

Chain g

30S ribosomal protein S7

Chain i

Small ribosomal subunit protein uS9