J3_8YP6_009
3D structure
- PDB id
- 8YP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM map of 30S ribosomal subunit in complex with MetAP1c of Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- AUUAAUUC*GAAGAACCUUAC*GGCUU
- Length
- 25 nucleotides
- Bulged bases
- 8YP6|1|a|A|957, 8YP6|1|a|G|958, 8YP6|1|a|A|960
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8YP6_009 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.2874
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8YP6|1|a|A|937
8YP6|1|a|U|938
8YP6|1|a|U|939
8YP6|1|a|A|940
8YP6|1|a|A|941
8YP6|1|a|U|942
8YP6|1|a|U|943
8YP6|1|a|C|944
*
8YP6|1|a|G|955
8YP6|1|a|A|956
8YP6|1|a|A|957
8YP6|1|a|G|958
8YP6|1|a|A|959
8YP6|1|a|A|960
8YP6|1|a|C|961
8YP6|1|a|C|962
8YP6|1|a|U|963
8YP6|1|a|U|964
8YP6|1|a|A|965
8YP6|1|a|C|966
*
8YP6|1|a|G|1202
8YP6|1|a|G|1203
8YP6|1|a|C|1204
8YP6|1|a|U|1205
8YP6|1|a|U|1206
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain A
- Methionine aminopeptidase
- Chain j
- Small ribosomal subunit protein uS10
- Chain m
- Small ribosomal subunit protein uS13
- Chain n
- Small ribosomal subunit protein uS14B
- Chain s
- Small ribosomal subunit protein uS19
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