J3_8YP6_011
3D structure
- PDB id
- 8YP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM map of 30S ribosomal subunit in complex with MetAP1c of Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UUUGACAU*GCAG*CUUAUG
- Length
- 18 nucleotides
- Bulged bases
- 8YP6|1|a|U|1193, 8YP6|1|a|U|1195
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8YP6_011 not in the Motif Atlas
- Homologous match to J3_5J7L_053
- Geometric discrepancy: 0.3536
- The information below is about J3_5J7L_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76475.2
- Basepair signature
- cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8YP6|1|a|U|972
8YP6|1|a|U|973
8YP6|1|a|U|974
8YP6|1|a|G|975
8YP6|1|a|A|976
8YP6|1|a|C|977
8YP6|1|a|A|978
8YP6|1|a|U|979
*
8YP6|1|a|G|1024
8YP6|1|a|C|1025
8YP6|1|a|A|1026
8YP6|1|a|G|1027
*
8YP6|1|a|C|1191
8YP6|1|a|U|1192
8YP6|1|a|U|1193
8YP6|1|a|A|1194
8YP6|1|a|U|1195
8YP6|1|a|G|1196
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain n
- Small ribosomal subunit protein uS14B
Coloring options: