J3_8YP6_015

3D structure

PDB id

8YP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM map of 30S ribosomal subunit in complex with MetAP1c of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UUGU*AGAC*GGUGG

Length

13 nucleotides

Bulged bases

8YP6|1|a|U|1164

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YP6|1|a|U|1095
8YP6|1|a|U|1096
8YP6|1|a|G|1097
8YP6|1|a|U|1098
*
8YP6|1|a|A|1136
8YP6|1|a|G|1137
8YP6|1|a|A|1138
8YP6|1|a|C|1139
*
8YP6|1|a|G|1162
8YP6|1|a|G|1163
8YP6|1|a|U|1164
8YP6|1|a|G|1165
8YP6|1|a|G|1166

Current chains

Chain a

16S rRNA

Nearby chains

Chain g

30S ribosomal protein S7

Chain i

Small ribosomal subunit protein uS9

Chain j

Small ribosomal subunit protein uS10

Chain n

Small ribosomal subunit protein uS14B