3D structure

PDB id
8YUO (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with P. putida tRNAIle2 at the A-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.25 Å

Loop

Sequence
GCA*UCAUAGUGAUCC*GCUCAAC
Length
22 nucleotides
Bulged bases
8YUO|1|a|A|2388, 8YUO|1|a|U|2390, 8YUO|1|a|A|2426
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8YUO_030 not in the Motif Atlas
Homologous match to J3_5J7L_070
Geometric discrepancy: 0.0671
The information below is about J3_5J7L_070
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_20992.1
Basepair signature
cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

8YUO|1|a|G|2282
8YUO|1|a|C|2283
8YUO|1|a|A|2284
*
8YUO|1|a|U|2384
8YUO|1|a|C|2385
8YUO|1|a|A|2386
8YUO|1|a|U|2387
8YUO|1|a|A|2388
8YUO|1|a|G|2389
8YUO|1|a|U|2390
8YUO|1|a|G|2391
8YUO|1|a|A|2392
8YUO|1|a|U|2393
8YUO|1|a|C|2394
8YUO|1|a|C|2395
*
8YUO|1|a|G|2421
8YUO|1|a|C|2422
8YUO|1|a|U|2423
8YUO|1|a|C|2424
8YUO|1|a|A|2425
8YUO|1|a|A|2426
8YUO|1|a|C|2427

Current chains

Chain a
23S rRNA

Nearby chains

Chain 0
50S ribosomal protein L33
Chain 2
50S ribosomal protein L35
Chain k
50S ribosomal protein L15
Chain v
50S ribosomal protein L27

Coloring options:


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