J3_8YUP_022

3D structure

PDB id

8YUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 and A4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8YUP|1|a|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8YUP_022 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.055

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8YUP|1|a|G|297
8YUP|1|a|G|298
8YUP|1|a|A|299
8YUP|1|a|A|300
8YUP|1|a|G|301
*
8YUP|1|a|C|316
8YUP|1|a|G|317
8YUP|1|a|C|318
8YUP|1|a|G|319
8YUP|1|a|A|320
8YUP|1|a|U|321
8YUP|1|a|A|322
8YUP|1|a|C|323
8YUP|1|a|A|324
8YUP|1|a|G|325
*
8YUP|1|a|C|337
8YUP|1|a|G|338
8YUP|1|a|U|339
8YUP|1|a|A|340
8YUP|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24