J3_8YUP_027
3D structure
- PDB id
- 8YUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome complexed with P. putida tRNAIle2 and A4 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.39 Å
Loop
- Sequence
- UCGACC*GAAA*UA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8YUP_027 not in the Motif Atlas
- Homologous match to J3_5J7L_043
- Geometric discrepancy: 0.0882
- The information below is about J3_5J7L_043
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92705.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
8YUP|1|a|U|1344
8YUP|1|a|C|1345
8YUP|1|a|G|1346
8YUP|1|a|A|1347
8YUP|1|a|C|1348
8YUP|1|a|C|1349
*
8YUP|1|a|G|1382
8YUP|1|a|A|1383
8YUP|1|a|A|1384
8YUP|1|a|A|1385
*
8YUP|1|a|U|1402
8YUP|1|a|A|1403
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain s
- 50S ribosomal protein L23
Coloring options: