J3_8YUQ_010

3D structure

PDB id

8YUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

8YUQ|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8YUQ_010 not in the Motif Atlas

Geometric match to J3_5J7L_007

Geometric discrepancy: 0.136

The information below is about J3_5J7L_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

8YUQ|1|A|C|990
8YUQ|1|A|U|991
8YUQ|1|A|U|992
8YUQ|1|A|G|993
*
8YUQ|1|A|C|1045
8YUQ|1|A|A|1046
8YUQ|1|A|G|1047
*
8YUQ|1|A|C|1210
8YUQ|1|A|U|1211
8YUQ|1|A|U|1212
8YUQ|1|A|A|1213
8YUQ|1|A|C|1214
8YUQ|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

30S ribosomal protein S14